publications

Peer-reviewed publications, preprints, and book chapters, in reverse chronological order.

9200
Total Citations
24
h-index
26
i10-index
30
Publications

Stats from Google Scholar, last updated 2026-06-19.

2025

  1. Tamoxifen induces PI3K activation in uterine cancer
    Kirsten Kübler, Agostina Nardone, Shankara Anand, and 4 more authors
    Nature Genetics, 2025
  2. Integrative proteogenomic analysis of lung adenocarcinoma across diverse ethnicities and exposures
    Shankha Satpathy, Natalie M. Clark, Yi-Ju Chen, and 4 more authors
    Cancer Cell, 2025
  3. Proteomic-based stemness score measures oncogenic dedifferentiation and enables the identification of druggable targets
    Iga Kołodziejczak-Guglas, Renan L. Simões, Emerson Souza Santos, and 4 more authors
    Cell Genomics, 2025
  4. Precision proteogenomics reveals pan-cancer impact of germline variants
    Fernanda Martins Rodrigues, Nadezhda V. Terekhanova, Kathleen J. Imbach, and 4 more authors
    Cell, 2025
  5. Light-chain (AL) amyloidosis for nephrologists: a contemporary treatment standard
    Shankara Anand, Maggie O’Neill-Dee, Vaishali Sanchorawala, and 1 more author
    Nephrology Dialysis Transplantation, 2025

2024

  1. Machine-learning based subgroups of AL amyloidosis and cumulative incidence of mortality and end stage kidney disease
    Shankara Anand, Andrew Staron, Lisa M. Mendelson, and 4 more authors
    American Journal of Hematology, 2024
  2. Systemic Amyloidosis and Kidney Transplantation: An Update
    Shankara Anand, Vaishali Sanchorawala, and Ashish Verma
    Seminars in Nephrology, 2024
  3. Comprehensive proteogenomic characterization of rare kidney tumors
    Ginny Xiaohe Li, Lijun Chen, Yi Hsiao, and 4 more authors
    Cell Reports Medicine, 2024
  4. Artificial Intelligence in Nephrology
    Shankara Anand and Ashish Verma
    In Artificial Intelligence in Clinical Practice, 2024

2023

  1. Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation
    Yifat Geffen, Shankara Anand, Yo Akiyama, and 3 more authors
    Cell, 2023
  2. Pan-cancer proteogenomics connects oncogenic drivers to functional states
    Yize Li, Eduard Porta-Pardo, Collin Tokheim, and 9 more authors
    Cell, 2023
  3. Proteogenomic data and resources for pan-cancer analysis
    Yize Li, Yongchao Dou, Felipe Da Veiga Leprevost, and 6 more authors
    Cancer Cell, 2023

2022

  1. Single cell characterization of myeloma and its precursor conditions reveals transcriptional signatures of early tumorigenesis
    Rebecca Boiarsky, Nicholas J. Haradhvala, Jean-Baptiste Alberge, and 4 more authors
    Nature Communications, 2022
  2. Immune biomarkers of response to immunotherapy in patients with high-risk smoldering myeloma
    Romanos Sklavenitis-Pistofidis, Michelle P. Aranha, Robert A. Redd, and 4 more authors
    Cancer Cell, 2022
  3. Host protein kinases required for SARS-CoV-2 nucleocapsid phosphorylation and viral replication
    Tomer M. Yaron, Brook E. Heaton, Tyler M. Levy, and 4 more authors
    Science Signaling, 2022
  4. High-resolution profiling of lung adenocarcinoma identifies expression subtypes with specific biomarkers and clinically relevant vulnerabilities
    Whijae Roh, Yifat Geffen, Hongui Cha, and 4 more authors
    Cancer Research, 2022
  5. Molecular map of chronic lymphocytic leukemia and its impact on outcome
    Binyamin A. Knisbacher, Ziao Lin, Cynthia K. Hahn, and 4 more authors
    Nature Genetics, 2022
  6. Genetic subtypes of smoldering multiple myeloma are associated with distinct pathogenic phenotypes and clinical outcomes
    Mark Bustoros, Shankara Anand, Romanos Sklavenitis-Pistofidis, and 1 more author
    Nature Communications, 2022
  7. Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function
    Gökcen Eraslan, Eugene Drokhlyansky, Shankara Anand, and 5 more authors
    Science, 2022

2021

  1. ZBTB33 is mutated in clonal hematopoiesis and myelodysplastic syndromes and impacts RNA splicing
    Ellen M. Beauchamp, Matthew Leventhal, Elsa Bernard, and 4 more authors
    Blood Cancer Discovery, 2021
  2. A proteogenomic portrait of lung squamous cell carcinoma
    Shankha Satpathy, Karsten Krug, Pierre M. Jean Beltran, and 4 more authors
    Cell, 2021
  3. Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease
    Olivia M. Goede, Daniel C. Nachun, Nicole M. Ferraro, and 4 more authors
    Cell, 2021
  4. ECLIPSER: identifying causal cell types and genes for complex traits through single cell enrichment of e/sQTL-mapped genes in GWAS loci
    Jamie M. Rouhana, Jiali Wang, Gökcen Eraslan, and 4 more authors
    bioRxiv, 2021
    Preprint

2020

  1. A quantitative proteome map of the human body
    Lihua Jiang, Meng Wang, Shin Lin, and 4 more authors
    Cell, 2020
  2. Transcriptomic signatures across human tissues identify functional rare genetic variation
    Nicole M. Ferraro, Benjamin J. Strober, Jonah Einson, and 4 more authors
    Science, 2020
  3. The GTEx Consortium atlas of genetic regulatory effects across human tissues
    GTEx Consortium
    Science, 2020
  4. Genomic profiling of smoldering multiple myeloma identifies patients at a high risk of disease progression
    Mark Bustoros, Romanos Sklavenitis-Pistofidis, Jihye Park, and 4 more authors
    Journal of Clinical Oncology, 2020

2019

  1. Scaling computational genomics to millions of individuals with GPUs
    Amaro Taylor-Weiner, François Aguet, Nicholas J. Haradhvala, and 4 more authors
    Genome Biology, 2019
  2. Prediction of pKa using machine learning methods with rooted topological torsion fingerprints: application to aliphatic amines
    Yipin Lu, Shankara Anand, William Shirley, and 4 more authors
    Journal of Chemical Information and Modeling, 2019

2018

  1. SNPs2ChIP: Latent Factors of ChIP-seq to Infer Functions of Non-coding SNPs
    Shankara Anand, Laurynas Kalesinskas, Craig Smail, and 1 more author
    In Proceedings of the Pacific Symposium on Biocomputing, 2018