software

Open-source software, algorithms, and publication code repositories I've developed for cancer genomics and computational biology.

Bioinformatics Tools

SignatureAnalyzer

GPU-accelerated Bayesian NMF for mutational and expression signatures

 getzlab/SignatureAnalyzer

CLUMPS-PTM

3D-structural clustering of post-translational modifications

 getzlab/CLUMPS-PTM

CLUMPS2

3D-structural clustering of somatic mutations

 getzlab/CLUMPS2

Publication Repositories

CPTAC Pan-Cancer PTM Analysis

Code for the pan-cancer post-translational modification analysis across CPTAC cohorts

 getzlab/CPTAC_PanCan_PTM_2023

SMM Clustering

Genomic and transcriptomic clustering of smoldering multiple myeloma

 getzlab/SMM_clustering_2020

AL Amyloidosis Subgroups

Machine-learning based clustering of systemic AL amyloidosis patients

 shankara-a/amyloidosis_bmc_2023